vg::MaximalExactMatch Class Reference

#include <mem.hpp>

Public Member Functions
	MaximalExactMatch (string::const_iterator b, string::const_iterator e, gcsa::range_type r, size_t m=0)
string	sequence (void) const
int	length (void) const
size_t	count_Ns (void) const
size_t	filter_hits_to (int limit)
	MaximalExactMatch (void)=default
	MaximalExactMatch (const MaximalExactMatch &)=default
	MaximalExactMatch (MaximalExactMatch &&)=default
MaximalExactMatch &	operator= (const MaximalExactMatch &) &=default
MaximalExactMatch &	operator= (MaximalExactMatch &&) &=default

Public Attributes
string::const_iterator	begin
string::const_iterator	end
gcsa::range_type	range
size_t	match_count
size_t	queried_count
int	fragment
bool	primary
std::vector< gcsa::node_type >	nodes
unordered_map< path_handle_t, vector< pair< size_t, bool > > >	positions

Friends
bool	operator== (const MaximalExactMatch &m1, const MaximalExactMatch &m2)
bool	operator< (const MaximalExactMatch &m1, const MaximalExactMatch &m2)
ostream &	operator<< (ostream &out, const MaximalExactMatch &m)

Constructor & Destructor Documentation

MaximalExactMatch() [1/4]

vg::MaximalExactMatch::MaximalExactMatch ( string::const_iterator  b, string::const_iterator  e, gcsa::range_type  r, size_t  m = 0  )

inline

MaximalExactMatch() [2/4]

vg::MaximalExactMatch::MaximalExactMatch ( void  )

default

MaximalExactMatch() [3/4]

vg::MaximalExactMatch::MaximalExactMatch ( const MaximalExactMatch &  )

default

MaximalExactMatch() [4/4]

vg::MaximalExactMatch::MaximalExactMatch ( MaximalExactMatch &&  )

default

Member Function Documentation

count_Ns()

size_t vg::MaximalExactMatch::count_Ns

(

void

)

const

filter_hits_to()

size_t vg::MaximalExactMatch::filter_hits_to

(

int

limit

)

length()

int vg::MaximalExactMatch::length

(

void

)

const

operator=() [1/2]

MaximalExactMatch& vg::MaximalExactMatch::operator= ( const MaximalExactMatch &  ) &

default

operator=() [2/2]

MaximalExactMatch& vg::MaximalExactMatch::operator= ( MaximalExactMatch &&  ) &

default

sequence()

string vg::MaximalExactMatch::sequence

(

void

)

const

Friends And Related Function Documentation

operator<

bool operator< ( const MaximalExactMatch &  m1, const MaximalExactMatch &  m2  )

friend

operator<<

ostream& operator<< ( ostream &  out, const MaximalExactMatch &  m  )

friend

operator==

bool operator== ( const MaximalExactMatch &  m1, const MaximalExactMatch &  m2  )

friend

Member Data Documentation

begin

string::const_iterator vg::MaximalExactMatch::begin

end

string::const_iterator vg::MaximalExactMatch::end

fragment

int vg::MaximalExactMatch::fragment

match_count

size_t vg::MaximalExactMatch::match_count

nodes

std::vector<gcsa::node_type> vg::MaximalExactMatch::nodes

positions

unordered_map<path_handle_t, vector<pair<size_t, bool> > > vg::MaximalExactMatch::positions

primary

bool vg::MaximalExactMatch::primary

queried_count

size_t vg::MaximalExactMatch::queried_count

range

gcsa::range_type vg::MaximalExactMatch::range

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The documentation for this class was generated from the following files:

• src/mem.hpp
• src/mem.cpp