vg::ReadMasker Class Reference

#include <gbwt_extender.hpp>

Public Member Functions
	ReadMasker (const std::string &valid_chars)
void	operator() (std::string &sequence) const
	Applies the mask to the given sequence. More...

Private Attributes
std::vector< char >	mask

Detailed Description

An utility class that masks all characters except the specified ones with X, which is assumed to not exist in the alignment target.

Constructor & Destructor Documentation

ReadMasker()

vg::ReadMasker::ReadMasker ( const std::string &  valid_chars )

explicit

Creates a new ReadMasker that masks all characters except the specified ones.

Member Function Documentation

operator()()

void vg::ReadMasker::operator()

(

std::string &

sequence

)

const

Applies the mask to the given sequence.

Member Data Documentation

mask

std::vector<char> vg::ReadMasker::mask

private

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The documentation for this class was generated from the following files:

• src/gbwt_extender.hpp
• src/gbwt_extender.cpp