gbwt_extender.hpp File Reference

#include <functional>
#include <unordered_set>
#include "aligner.hpp"
#include <gbwtgraph/cached_gbwtgraph.h>

Classes
struct	vg::GaplessExtension
class	vg::ReadMasker
class	vg::GaplessExtender
struct	vg::WFAAlignment
class	vg::WFAExtender
struct	vg::WFAExtender::ErrorModel
struct	vg::WFAExtender::ErrorModel::Event

Namespaces
	vg
	std
	Hash functor to hash NodeSides using std::hash.

Functions
std::ostream &	vg::operator<< (std::ostream &out, const WFAAlignment::Edit &edit)
	Allow printing an Edit. More...
std::string	std::to_string (const vg::WFAAlignment::Edit &edit)
	Convert a WFAAlignment Edit operation to a string. More...

Detailed Description

Haplotype-consistent seed extension in GBWTGraph.