vg::WFAExtender::ErrorModel::Event Struct Reference

#include <gbwt_extender.hpp>

Public Member Functions
int32_t	evaluate (size_t length) const

Public Attributes
double	per_base
	How many of the event should we allow per base? More...
int32_t	min
int32_t	max

Detailed Description

We have one of these each for matches, mismatches, and gaps to define how many of them to allow.

Member Function Documentation

evaluate()

int32_t vg::WFAExtender::ErrorModel::Event::evaluate ( size_t  length ) const

inline

Evaluate the model and get a limit number for this kind of event for a given sequence length.

Member Data Documentation

max

int32_t vg::WFAExtender::ErrorModel::Event::max

min

int32_t vg::WFAExtender::ErrorModel::Event::min

How many should we allow at least or at most, regardless of sequence length? Min is a bonus over the per-base calculation, but max is a cap.

per_base

double vg::WFAExtender::ErrorModel::Event::per_base

How many of the event should we allow per base?

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The documentation for this struct was generated from the following file:

• src/gbwt_extender.hpp