vg::SpliceRegion Class Reference

#include <splicing.hpp>

Public Member Functions
	SpliceRegion (const pos_t &seed_pos, bool search_left, int64_t search_dist, const HandleGraph &graph, const DinucleotideMachine &dinuc_machine, const SpliceStats &splice_stats)
	SpliceRegion ()=default
	~SpliceRegion ()=default
const vector< tuple< handle_t, size_t, int64_t > > &	candidate_splice_sites (size_t motif_num) const
const IncrementalSubgraph &	get_subgraph () const
const pair< handle_t, size_t > &	get_seed_pos () const

Private Attributes
IncrementalSubgraph	subgraph
pair< handle_t, size_t >	seed
vector< vector< tuple< handle_t, size_t, int64_t > > >	motif_matches

Constructor & Destructor Documentation

SpliceRegion() [1/2]

vg::SpliceRegion::SpliceRegion	(	const pos_t &	seed_pos,
		bool	search_left,
		int64_t	search_dist,
		const HandleGraph &	graph,
		const DinucleotideMachine &	dinuc_machine,
		const SpliceStats &	splice_stats
	)

SpliceRegion() [2/2]

vg::SpliceRegion::SpliceRegion ( )

default

~SpliceRegion()

vg::SpliceRegion::~SpliceRegion ( )

default

Member Function Documentation

candidate_splice_sites()

const vector< tuple< handle_t, size_t, int64_t > > & vg::SpliceRegion::candidate_splice_sites

(

size_t

motif_num

)

const

get_seed_pos()

const pair< handle_t, size_t > & vg::SpliceRegion::get_seed_pos

(

)

const

get_subgraph()

const IncrementalSubgraph & vg::SpliceRegion::get_subgraph

(

)

const

Member Data Documentation

motif_matches

vector<vector<tuple<handle_t, size_t, int64_t> > > vg::SpliceRegion::motif_matches

private

seed

pair<handle_t, size_t> vg::SpliceRegion::seed

private

subgraph

IncrementalSubgraph vg::SpliceRegion::subgraph

private

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The documentation for this class was generated from the following files:

• src/splicing.hpp
• src/splicing.cpp