cluster_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <iostream>
#include <cassert>
#include <vector>
#include <unordered_set>
#include <chrono>
#include "subcommand.hpp"
#include "../snarl_seed_clusterer.hpp"
#include "../gbwtgraph_helper.hpp"
#include "../zip_code_tree.hpp"
#include "../mapper.hpp"
#include "../annotation.hpp"
#include "../xg.hpp"
#include "../minimizer_mapper.hpp"
#include "../index_registry.hpp"
#include <vg/io/vpkg.hpp>
#include <vg/io/stream.hpp>
#include <vg/io/protobuf_emitter.hpp>
#include <gbwtgraph/minimizer.h>
#include <gbwtgraph/gbwtgraph.h>
#include <gbwtgraph/gbz.h>
#include <bdsg/overlays/overlay_helper.hpp>

Functions
void	help_cluster (char **argv)
int	main_cluster (int argc, char **argv)

Detailed Description

: experimental snarl clustering test harness

Function Documentation

help_cluster()

void help_cluster

(

char **

argv

)

main_cluster()

int main_cluster	(	int	argc,
		char **	argv
	)