minimizer_mapper.hpp File Reference

#include "algorithms/chain_items.hpp"
#include "algorithms/nearest_offsets_in_paths.hpp"
#include "aligner.hpp"
#include "vg/io/alignment_emitter.hpp"
#include "gbwt_extender.hpp"
#include "snarl_seed_clusterer.hpp"
#include "mapper.hpp"
#include "snarls.hpp"
#include "tree_subgraph.hpp"
#include "funnel.hpp"
#include <gbwtgraph/minimizer.h>
#include <structures/immutable_list.hpp>
#include <atomic>

Classes
class	vg::MinimizerMapper
struct	vg::MinimizerMapper::Minimizer

Namespaces
	vg

Detailed Description

Defines a mapper that uses the minimizer index and GBWT-based extension.