deconstruct_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <iostream>
#include "subcommand.hpp"
#include "../vg.hpp"
#include "../deconstructor.hpp"
#include "../integrated_snarl_finder.hpp"
#include "../gbwtgraph_helper.hpp"
#include "../gbwt_helper.hpp"
#include "../gbzgraph.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include <gbwtgraph/utils.h>
#include <gbwtgraph/index.h>

Functions
void	help_deconstruct (char **argv)
int	main_deconstruct (int argc, char **argv)

Detailed Description

Defines the "vg deconstruct" subcommand, which turns graphs back into VCFs.

Function Documentation

help_deconstruct()

void help_deconstruct

(

char **

argv

)

main_deconstruct()

int main_deconstruct	(	int	argc,
		char **	argv
	)