filter.hpp File Reference

#include <vector>
#include <cstdlib>
#include <iostream>
#include <unordered_map>
#include <sstream>
#include <string>
#include <math.h>
#include "vg.hpp"
#include "mapper.hpp"
#include <vg/vg.pb.h>

Classes
struct	vg::BREAKPOINT
class	vg::Filter

Namespaces
	vg

Detailed Description

Provides a way to filter Edits contained within Alignments. This can be used to clean out sequencing errors and to find high-quality candidates for variant calling.