vg::BREAKPOINT Struct Reference

#include <filter.hpp>

Public Member Functions
int	total_supports ()
bool	overlap (BREAKPOINT p, int dist)
string	to_string ()

Public Attributes
string	name
Position	position
vector< BREAKPOINT >	mates
string	contig
int64_t	start = -1
int64_t	upper_bound = 100
int64_t	lower_bound = 100
bool	isForward
int	SV_TYPE = 0
int	normal_supports = 0
int	tumor_supports = 0
int	fragl_supports = 0
int	split_supports = 0
int	other_supports = 0

Member Function Documentation

overlap()

bool vg::BREAKPOINT::overlap ( BREAKPOINT  p, int  dist  )

inline

to_string()

string vg::BREAKPOINT::to_string ( )

inline

total_supports()

int vg::BREAKPOINT::total_supports ( )

inline

Member Data Documentation

contig

string vg::BREAKPOINT::contig

fragl_supports

int vg::BREAKPOINT::fragl_supports = 0

isForward

bool vg::BREAKPOINT::isForward

lower_bound

int64_t vg::BREAKPOINT::lower_bound = 100

mates

vector<BREAKPOINT> vg::BREAKPOINT::mates

name

string vg::BREAKPOINT::name

normal_supports

int vg::BREAKPOINT::normal_supports = 0

other_supports

int vg::BREAKPOINT::other_supports = 0

position

Position vg::BREAKPOINT::position

split_supports

int vg::BREAKPOINT::split_supports = 0

start

int64_t vg::BREAKPOINT::start = -1

SV_TYPE

int vg::BREAKPOINT::SV_TYPE = 0

tumor_supports

int vg::BREAKPOINT::tumor_supports = 0

upper_bound

int64_t vg::BREAKPOINT::upper_bound = 100

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The documentation for this struct was generated from the following file:

• src/filter.hpp