- a -

• annotation_t : vg::DiagramExplainer

- b -

• bin_t : vg::StreamIndexBase

- c -

• CallTable : vg::NestedFlowCaller
• candidate_id_t : vg::MultipathMapper
• chars_t : vg::algorithms::GFAParser
• clock : vg::Funnel , vg::Watchdog
• Cluster : vg::MinimizerMapper
• cluster_t : vg::MEMClusterer
• cluster_type : vg::GaplessExtender
• clustergraph_t : vg::MultipathMapper
• code_type : vg::MIPayload , vg::ZipCode
• compact_sequence_type : vg::Haplotypes
• const_iterator : vg::ShuffledPairs
• cursor_t : vg::algorithms::GFAParser , vg::IndexedVG , vg::StreamIndex< Message > , vg::StreamSorter< Message >

- d -

• decomposition_source_t : handlegraph::BuildableSnarlDecomposition
• difference_type : vg::count_back_inserter< T > , vg::VectorView< Item >::const_iterator
• duration : vg::Watchdog

- e -

• edge_ref_t : vg::DiagramExplainer
• effective_position_t : vg::Funnel
• emitter_t : vg::StreamSorter< Message >

- g -

• gen_flat_node : haplo::haplo_DP_rectangle
• gen_range_t : haplo::haplo_DP_rectangle
• group_listener_t : vg::io::MessageEmitter , vg::io::ProtobufEmitter< T >

- h -

• hit_t : vg::MEMClusterer
• Holder : vg::subcommand::FlagArgSpec< Receiver > , vg::subcommand::RangeArgSpec< T, Receiver >

- i -

• ImmutablePath : vg::MinimizerMapper
• iterator : vg::PathIndex
• iterator_category : std::iterator_traits< vg::PhasedGenome::iterator > , std::iterator_traits< vg::ZipCodeTree::iterator > , std::iterator_traits< vg::ZipCodeTree::reverse_iterator > , vg::count_back_inserter< T > , vg::VectorView< Item >::const_iterator

- k -

• key_type : vg::WFAPoint
• kmer_type : vg::HaplotypePartitioner , vg::Haplotypes::Subchain , vg::ParallelKFFReader

- m -

• map_entry_type : vg::WFAPoint
• mapping_type : vg::RebuildJob
• match_fanouts_t : vg::MEMClusterer , vg::MultipathMapper
• memcluster_t : vg::MultipathMapper
• message_listener_t : vg::io::ProtobufEmitter< T >
• minimizer_index_type : vg::HaplotypePartitioner

- n -

• Node : vg::Tree< T >
• nodeType : haplo::linear_haplo_structure

- p -

• param_type : vg::discrete_distribution< T >
• path_chunk_t : vg::Surjector
• path_type : job_type , vg::PhaseUnfolder
• pointer : vg::count_back_inserter< T > , vg::VectorView< Item >::const_iterator

- r -

• reference : vg::count_back_inserter< T > , vg::VectorView< Item >::const_iterator
• result_type : vg::discrete_distribution< T > , vg::normal_distribution< T > , vg::truncated_normal_distribution< T > , vg::uniform_int_distribution< T > , vg::uniform_real_distribution< T > , vg::WideningPRNG< PRNG, OutType >

- s -

• search_type : vg::PhaseUnfolder
• Seed : vg::MinimizerMapper , vg::ZipCodeForest , vg::ZipCodeTree
• seed_type : vg::GaplessExtender , vg::GaplessExtension
• sequence_type : vg::HaplotypePartitioner , vg::Haplotypes , vg::Recombinator , vg::RecombinatorHaplotype
• state_type : vg::PhaseUnfolder
• stored_edge_t : vg::DiagramExplainer
• suggested_edge_t : vg::DiagramExplainer
• SupportMap : vg::NestedCachedPackedTraversalSupportFinder

- t -

• T : vg::subcommand::FlagArgSpec< Receiver >
• tag_list_t : vg::algorithms::GFAParser
• TaggedMessage : vg::io::MessageIterator
• time_point : vg::Funnel , vg::Watchdog
• tree_item_t : vg::ZipCodeForest
• tree_item_type_t : vg::ZipCodeForest
• type : handlegraph::return_type_of< Returns(*)(Args...)> , handlegraph::return_type_of< Returns(Owner::*)(Args...) const > , handlegraph::return_type_of< Returns(Owner::*)(Args...)> , vg::Range< Number >

- v -

• Value : vg::Option< vector< Item >, Parser >
• value_type : std::iterator_traits< vg::PhasedGenome::iterator > , std::iterator_traits< vg::ZipCodeTree::iterator > , std::iterator_traits< vg::ZipCodeTree::reverse_iterator > , vg::count_back_inserter< T > , vg::PhasedGenome::iterator , vg::SmallBitset , vg::VectorView< Item >::const_iterator , vg::WFAPoint
• Verbosity : vg::HaplotypePartitioner , vg::Recombinator

- w -

• window_t : vg::StreamIndexBase