Here is a list of all class members with links to the classes they belong to:

- w -

• w : HaplotypesConfig
• wabbit_map : Vectorizer
• wabbitize() : Vectorizer
• wait_for_region : vg::GraphSynchronizer
• walk_backwards() : vg::NGSSimulator
• walk_backwards_along_alignment() : vg::NGSSimulator
• walk_fanout_path() : vg::BaseMapper
• walk_listeners : vg::algorithms::GFAParser
• walk_t() : vg::algorithms::walk_t
• want_breakpoint() : vg::io::StreamMultiplexer
• warn_on_ambiguous : vg::Constructor
• warn_on_lowercase : vg::Constructor
• warn_on_missing_variants : vg::HaplotypeIndexer
• warned_about_bad_distribution : vg::MinimizerMapper
• warned_about_chunking : vg::Mapper
• warned_about_rescue_size : vg::MinimizerMapper
• warned_about_rewrites : vg::VG
• warned_about_subgraph_size : vg::Surjector
• warned_about_tail_size : vg::MinimizerMapper
• was_correct() : vg::Funnel
• was_provided_directly() : vg::IndexFile
• was_set() : vg::subcommand::ArgSpec< T, Receiver > , vg::subcommand::ValueArgSpec< T, Receiver, Holder >
• Watchdog() : vg::Watchdog
• watchdog_timeout : GiraffeMainOptions
• watcher : vg::Watchdog
• watcher_loop() : vg::Watchdog
• wavefronts : vg::WFANode
• weight : vg::algorithms::Edge , vg::algorithms::Node , vg::AlignmentChainModelVertex , vg::MEMChainModelVertex , vg::MEMClusterer::HitEdge
• wfa_alignment_to_alignment() : vg::MinimizerMapper
• wfa_distance : vg::MinimizerMapper
• wfa_distance_per_base : vg::MinimizerMapper
• wfa_max_distance : vg::MinimizerMapper
• wfa_max_max_mismatches : vg::MinimizerMapper
• wfa_max_mismatches : vg::MinimizerMapper
• wfa_max_mismatches_per_base : vg::MinimizerMapper
• wfa_middle : vg::MinimizerMapper::aligner_stats_t::stat_set_t
• wfa_tail : vg::MinimizerMapper::aligner_stats_t::stat_set_t
• WFAExtender() : vg::WFAExtender
• WFANode() : vg::WFANode
• WFATree() : vg::WFATree
• what() : j2pb_error , vg::algorithms::GFAFormatError , vg::InsufficientInputException , vg::NoAlignmentInBandException , vg::RewindPlanException , vg::SizeLimitExceededException
• which_haplotype() : vg::PhasedGenome::iterator
• whole_alignment_cutoff : vg::VariantAdder
• whole_graph_lock : vg::GraphSynchronizer
• WideningPRNG() : vg::WideningPRNG< PRNG, OutType >
• window_breaking_quality() : vg::MinimizerMapper
• window_length : vg::Filter
• window_of_id() : vg::StreamIndexBase
• WINDOW_SHIFT : vg::StreamIndexBase
• window_size() : vg::MinimizerMapper::Minimizer , vg::WindowedVcfBuffer
• window_t : vg::StreamIndexBase
• window_to_start : vg::StreamIndexBase
• WindowedVcfBuffer() : vg::WindowedVcfBuffer
• with_cache_entry() : vg::IndexedVG
• with_cursor() : vg::IndexedVG
• with_dagified_local_graph() : vg::MinimizerMapper
• with_path_index() : vg::GraphSynchronizer
• with_progress() : vg::Progressive
• with_putback() : vg::io::VPKG
• with_save_stream() : vg::io::VPKG
• with_vector() : vg::VectorView< Item >
• without_read() : vg::alignment_index_t
• work_dir : vg::IndexRegistry
• wrap() : handlegraph::BoolReturningWrapper< Iteratee, false > , handlegraph::BoolReturningWrapper< Iteratee, true >
• wrap_with_null_nodes() : vg::VG
• wrapped_ostream : vg::io::BlockedGzipOutputStream
• write : hFILE_backend , vg::GAFSorterFile , vg::io::JSONStreamHelper< T > , vg::io::MessageEmitter , vg::io::ProtobufEmitter< T > , vg::Paths
• write_annotations() : vg::DiagramExplainer
• write_connected_components() : vg::DiagramExplainer
• write_copy() : vg::io::MessageEmitter , vg::io::ProtobufEmitter< T >
• write_edge() : vg::DiagramExplainer
• write_edits() : vg::Packer
• write_gcsa_kmers_ascii() : vg::VGset
• write_gcsa_kmers_binary() : vg::VGset
• write_globals() : vg::DiagramExplainer
• write_graph() : vg::Transcriptome
• write_line() : vg::GAFSorterRecord
• write_many() : vg::io::ProtobufEmitter< T >
• write_mapping() : vg::PhaseUnfolder
• write_node() : vg::DiagramExplainer
• write_output : vg::ReadFilter< Read >
• write_supports() : vg::SupportAugmentedGraph
• write_transcript_info() : vg::Transcriptome
• write_transcript_sequences() : vg::Transcriptome
• write_translations() : vg::AugmentedGraph
• write_tsv : vg::ReadFilter< Read >
• write_variant() : vg::Genotyper
• write_variants() : vg::VCFOutputCaller
• write_vcf_header() : vg::Genotyper
• WriteAliasedRaw() : vg::io::BlockedGzipOutputStream
• writer_stop : vg::io::StreamMultiplexer
• writer_thread : vg::io::StreamMultiplexer
• writer_thread_function() : vg::io::StreamMultiplexer
• wrong_name : vg::Counts
• wrong_refpos : vg::Counts