|
| std::string | gafkluge::int_to_string (int64_t i) |
| |
| int64_t | gafkluge::string_to_int (const std::string &s) |
| |
| bool | gafkluge::is_missing (const std::string &s) |
| |
| bool | gafkluge::is_missing (int64_t i) |
| |
| bool | gafkluge::is_gaf_header_line (const std::string &line) |
| | Returns true if the given line is a GAF header line. More...
|
| |
| bool | gafkluge::is_gaf_header_line (const char *line) |
| |
| void | gafkluge::write_gaf_file_header (std::ostream &out, const std::string &version) |
| | Writes a GAF file header with the given version number to the given output stream. More...
|
| |
| void | gafkluge::parse_gaf_record (const std::string &gaf_line, GafRecord &gaf_record) |
| |
| void | gafkluge::for_each_cs (const GafRecord &gaf_record, std::function< void(const std::string &)> fn) |
| |
| void | gafkluge::for_each_cg (const GafRecord &gaf_record, std::function< void(const char &, const size_t &)> fn) |
| |
| void | gafkluge::for_each_cigar (const GafRecord &gaf_record, std::function< void(const char &, const size_t &, const std::string &, const std::string &)> fn) |
| |
| std::ostream & | gafkluge::operator<< (std::ostream &os, const gafkluge::GafStep &gaf_step) |
| |
| std::ostream & | gafkluge::operator<< (std::ostream &os, const gafkluge::GafRecord &gaf_record) |
| |
Barebones header-only standalone GAF parser reads GAF lines into and out of structs Named in honour of gfakluge
