Functions
std::string	int_to_string (int64_t i)

int64_t	string_to_int (const std::string &s)

bool	is_missing (const std::string &s)

bool	is_missing (int64_t i)

void	parse_gaf_record (const std::string &gaf_line, GafRecord &gaf_record)

void	for_each_cs (const GafRecord &gaf_record, std::function< void(const std::string &)> fn)

void	for_each_cg (const GafRecord &gaf_record, std::function< void(const char &, const size_t &)> fn)

void	for_each_cigar (const GafRecord &gaf_record, std::function< void(const char &, const size_t &, const std::string &, const std::string &)> fn)

std::ostream &	operator<< (std::ostream &os, const gafkluge::GafStep &gaf_step)

std::ostream &	operator<< (std::ostream &os, const gafkluge::GafRecord &gaf_record)

Function Documentation

◆ for_each_cg()

void gafkluge::for_each_cg	(	const GafRecord &	gaf_record,
		std::function< void(const char &, const size_t &)>	fn
	)

inline

void gafkluge::for_each_cigar	(	const GafRecord &	gaf_record,
		std::function< void(const char &, const size_t &, const std::string &, const std::string &)>	fn
	)

inline

void gafkluge::for_each_cs	(	const GafRecord &	gaf_record,
		std::function< void(const std::string &)>	fn
	)

inline

std::string gafkluge::int_to_string ( int64_t i )

inline

bool gafkluge::is_missing ( const std::string & s )

inline

bool gafkluge::is_missing ( int64_t i )

inline

std::ostream& gafkluge::operator<<	(	std::ostream &	os,
		const gafkluge::GafRecord &	gaf_record
	)

inline

Write a GAF record to a stream

std::ostream& gafkluge::operator<<	(	std::ostream &	os,
		const gafkluge::GafStep &	gaf_step
	)

inline

void gafkluge::parse_gaf_record	(	const std::string &	gaf_line,
		GafRecord &	gaf_record
	)

inline

Parse a single GAF record

int64_t gafkluge::string_to_int ( const std::string & s )

inline