#include <gafkluge.hpp>

Public Member Functions
	GafRecord ()

Public Attributes
std::string	query_name

int64_t	query_length

int64_t	query_start

int64_t	query_end

int64_t	path_length

int64_t	path_start

int64_t	path_end

int64_t	matches

int64_t	block_length

int32_t	mapq

char	strand

std::vector< GafStep >	path

std::map< std::string, std::pair< std::string, std::string > >	opt_fields

Detailed Description

One line of GAF as described here: https://github.com/lh3/gfatools/blob/master/doc/rGFA.md

Constructor & Destructor Documentation

◆ GafRecord()

gafkluge::GafRecord::GafRecord ( )

inline

Member Data Documentation

◆ block_length

int64_t gafkluge::GafRecord::block_length

◆ mapq

int32_t gafkluge::GafRecord::mapq

◆ matches

int64_t gafkluge::GafRecord::matches

◆ opt_fields

std::map<std::string, std::pair<std::string, std::string> > gafkluge::GafRecord::opt_fields

◆ path

std::vector<GafStep> gafkluge::GafRecord::path

◆ path_end

int64_t gafkluge::GafRecord::path_end

◆ path_length

int64_t gafkluge::GafRecord::path_length

◆ path_start

int64_t gafkluge::GafRecord::path_start

◆ query_end

int64_t gafkluge::GafRecord::query_end

◆ query_length

int64_t gafkluge::GafRecord::query_length

◆ query_name

std::string gafkluge::GafRecord::query_name

◆ query_start

int64_t gafkluge::GafRecord::query_start

◆ strand

char gafkluge::GafRecord::strand

The documentation for this struct was generated from the following file:

deps/libvgio/include/vg/io/gafkluge.hpp

Public Member Functions

Public Attributes