mcmc_genotyper.hpp File Reference

#include <map>
#include <string>
#include <vg/vg.pb.h>
#include <vector>
#include "phased_genome.hpp"
#include "multipath_alignment.hpp"
#include "algorithms/min_cut_graph.hpp"
#include "sparse_union_find.hpp"

Classes
class	vg::MCMCGenotyper

Namespaces
	vg

Detailed Description

mcmc_genotyper.hpp: defines a class that implements mcmc probabilistic model for variant calling.