minimizer_mapper_from_chains.cpp File Reference

#include "minimizer_mapper.hpp"
#include "annotation.hpp"
#include "path_subgraph.hpp"
#include "multipath_alignment.hpp"
#include "split_strand_graph.hpp"
#include "subgraph.hpp"
#include "statistics.hpp"
#include "algorithms/count_covered.hpp"
#include "algorithms/intersect_path_offsets.hpp"
#include "algorithms/extract_containing_graph.hpp"
#include "algorithms/extract_connecting_graph.hpp"
#include "algorithms/extract_extending_graph.hpp"
#include "algorithms/chain_items.hpp"
#include <bdsg/overlays/strand_split_overlay.hpp>
#include <gbwtgraph/algorithms.h>
#include <gbwtgraph/cached_gbwtgraph.h>
#include <iostream>
#include <algorithm>
#include <cmath>
#include <cfloat>

Namespaces
	vg

Detailed Description

Defines the code for the long-read code path for the minimizer-and-GBWT-based mapper (long read Giraffe).