multipath_mapper.hpp File Reference

#include <algorithm>
#include <vg/vg.pb.h>
#include <structures/union_find.hpp>
#include <gbwt/gbwt.h>
#include <vg/io/edit.hpp>
#include <bdsg/hash_graph.hpp>
#include "mapper.hpp"
#include "aligner.hpp"
#include "types.hpp"
#include "multipath_alignment.hpp"
#include "snarls.hpp"
#include "haplotypes.hpp"
#include "snarl_distance_index.hpp"
#include "path_component_index.hpp"
#include "splicing.hpp"
#include "memoizing_graph.hpp"

Classes
class	vg::MultipathMapper

Namespaces
	vg

Detailed Description

Defines the MultipathMapper class