stats_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include <vg/io/vpkg.hpp>
#include <vg/io/stream.hpp>
#include "subcommand.hpp"
#include "../algorithms/distance_to_head.hpp"
#include "../algorithms/distance_to_tail.hpp"
#include "../handle.hpp"
#include "../integrated_snarl_finder.hpp"
#include "../annotation.hpp"
#include "../snarl_distance_index.hpp"
#include "../path.hpp"
#include "../statistics.hpp"
#include "../genotypekit.hpp"
#include "xg.hpp"
#include "bdsg/packed_graph.hpp"
#include "bdsg/hash_graph.hpp"
#include <bdsg/overlays/overlay_helper.hpp>
#include "../io/converted_hash_graph.hpp"
#include "../io/save_handle_graph.hpp"
#include "../gbzgraph.hpp"

Functions
void	help_stats (char **argv)
int	main_stats (int argc, char **argv)

Detailed Description

Defines the "vg stats" subcommand, which evaluates graphs and alignments.

Function Documentation

help_stats()

void help_stats

(

char **

argv

)

main_stats()

int main_stats	(	int	argc,
		char **	argv
	)