haplo::haploMath::RRMemo Struct Reference

#include <haplotypes.hpp>

Public Member Functions
	RRMemo (double recombination_penalty, size_t population_size)
double	log_population_size ()
double	log_recombination_penalty ()
double	log_continue_factor (int64_t totwidth)
double	logT (int width)
double	logS (int height, int width)
double	logRRDiff (int height, int width)

Public Attributes
double	logT_base

Private Attributes
size_t	population_size
double	exp_rho
double	rho
double	log_continue_probability
std::vector< double >	logS_bases

Constructor & Destructor Documentation

RRMemo()

haplo::haploMath::RRMemo::RRMemo	(	double	recombination_penalty,
		size_t	population_size
	)

Member Function Documentation

log_continue_factor()

double haplo::haploMath::RRMemo::log_continue_factor

(

int64_t

totwidth

)

log_population_size()

double haplo::haploMath::RRMemo::log_population_size

(

)

log_recombination_penalty()

double haplo::haploMath::RRMemo::log_recombination_penalty

(

)

logRRDiff()

double haplo::haploMath::RRMemo::logRRDiff	(	int	height,
		int	width
	)

logS()

double haplo::haploMath::RRMemo::logS	(	int	height,
		int	width
	)

logT()

double haplo::haploMath::RRMemo::logT

(

int

width

)

Member Data Documentation

exp_rho

double haplo::haploMath::RRMemo::exp_rho

private

log_continue_probability

double haplo::haploMath::RRMemo::log_continue_probability

private

logS_bases

std::vector<double> haplo::haploMath::RRMemo::logS_bases

private

logT_base

double haplo::haploMath::RRMemo::logT_base

population_size

size_t haplo::haploMath::RRMemo::population_size

private

rho

double haplo::haploMath::RRMemo::rho

private

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The documentation for this struct was generated from the following files:

• src/haplotypes.hpp
• src/haplotypes.cpp