vg::DeleteHaplotypeCommand Struct Reference

#include <genome_state.hpp>

Inheritance diagram for vg::DeleteHaplotypeCommand:

Public Member Functions
virtual GenomeStateCommand *	execute (GenomeState &state) const
virtual	~DeleteHaplotypeCommand ()=default
Public Member Functions inherited from vg::GenomeStateCommand
virtual	~GenomeStateCommand ()=default

Public Attributes
unordered_map< const Snarl *, vector< size_t > >	deletions

Constructor & Destructor Documentation

~DeleteHaplotypeCommand()

virtual vg::DeleteHaplotypeCommand::~DeleteHaplotypeCommand ( )

virtualdefault

Member Function Documentation

execute()

GenomeStateCommand * vg::DeleteHaplotypeCommand::execute ( GenomeState &  state ) const

virtual

Execute this command on the given state and return the reverse command. Generally ends up calling a command-type-specific method on the GenomeState that does the actual work.

Implements vg::GenomeStateCommand.

Member Data Documentation

deletions

unordered_map<const Snarl*, vector<size_t> > vg::DeleteHaplotypeCommand::deletions

For each snarl, delete the haplotype in each overall lane in the vector. You must specify out the deletions for all the snarls in a haplotype; we won't automatically go and find the children if you just list to delete from the parents. Deletions happen from begin to end through each vector. Lane numbers for a given snarl must be strictly decreasing.

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The documentation for this struct was generated from the following files:

• src/genome_state.hpp
• src/genome_state.cpp