genome_state.hpp File Reference

#include "handle.hpp"
#include "snarls.hpp"
#include <vector>
#include <unordered_map>
#include <utility>
#include <tuple>

Classes
class	vg::SnarlState
struct	vg::GenomeStateCommand
struct	vg::InsertHaplotypeCommand
struct	vg::DeleteHaplotypeCommand
struct	vg::SwapHaplotypesCommand
struct	vg::AppendHaplotypeCommand
struct	vg::ReplaceSnarlHaplotypeCommand
struct	vg::ReplaceLocalHaplotypeCommand
class	vg::GenomeState

Namespaces
	vg

Detailed Description

MCMC-friendly genome state representation.