#include <genome_state.hpp>

Inheritance diagram for vg::ReplaceSnarlHaplotypeCommand:

Public Member Functions
virtual GenomeStateCommand *	execute (GenomeState &state) const

virtual	~ReplaceSnarlHaplotypeCommand ()=default

Public Member Functions inherited from vg::GenomeStateCommand
virtual	~GenomeStateCommand ()=default

Public Attributes
const Snarl *	snarl
	Which snarl are we working on? More...

size_t	lane
	Which lane in the snarl are we changing? More...

vector< handle_t >	haplotype

Constructor & Destructor Documentation

◆ ~ReplaceSnarlHaplotypeCommand()

virtual vg::ReplaceSnarlHaplotypeCommand::~ReplaceSnarlHaplotypeCommand ( )

virtualdefault

Member Function Documentation

◆ execute()

GenomeStateCommand * vg::ReplaceSnarlHaplotypeCommand::execute ( GenomeState & state ) const

virtual

Execute this command on the given state and return the reverse command. Generally ends up calling a command-type-specific method on the GenomeState that does the actual work.

Implements vg::GenomeStateCommand.

Member Data Documentation

◆ haplotype

vector<handle_t> vg::ReplaceSnarlHaplotypeCommand::haplotype

What fully specified haplotype should we replace it with? This gets around any problems to do with increases or decreases in the copy numbers of child snarls being underspecified.

◆ lane

size_t vg::ReplaceSnarlHaplotypeCommand::lane

Which lane in the snarl are we changing?

◆ snarl

const Snarl* vg::ReplaceSnarlHaplotypeCommand::snarl

Which snarl are we working on?

The documentation for this struct was generated from the following files:

src/genome_state.hpp
src/genome_state.cpp

Public Member Functions

Public Attributes