vg::Exon Struct Reference

#include <transcriptome.hpp>

Public Attributes
pair< int32_t, int32_t >	coordinates
	Exon coordinates (start and end) on the chromosome/contig. More...
pair< uint32_t, uint32_t >	border_offsets
pair< step_handle_t, step_handle_t >	border_steps

Detailed Description

Data structure that defines a transcript annotation.

Member Data Documentation

border_offsets

pair<uint32_t, uint32_t> vg::Exon::border_offsets

Exon border node offsets (last position in upstream intron and first position in downstream intron) on a graph.

border_steps

pair<step_handle_t, step_handle_t> vg::Exon::border_steps

Exon border reference path steps (last position in upstream intron and first position in downstream intron) on a graph.

coordinates

pair<int32_t, int32_t> vg::Exon::coordinates

Exon coordinates (start and end) on the chromosome/contig.

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The documentation for this struct was generated from the following file:

• src/transcriptome.hpp