transcriptome.hpp File Reference

#include <algorithm>
#include <mutex>
#include <functional>
#include <google/protobuf/util/message_differencer.h>
#include <gbwt/dynamic_gbwt.h>
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include <handlegraph/mutable_path_mutable_handle_graph.hpp>
#include <bdsg/overlays/path_position_overlays.hpp>
#include <sparsepp/spp.h>
#include "vg.hpp"
#include "types.hpp"
#include "gbwt_helper.hpp"

Classes
struct	vg::Exon
struct	vg::Transcript
struct	vg::TranscriptPath
struct	vg::EditedTranscriptPath
struct	vg::CompletedTranscriptPath
struct	vg::MappingHash
class	vg::Transcriptome

Namespaces
	vg

Typedefs
typedef vector< gbwt::node_type >	vg::exon_nodes_t
typedef vector< gbwt::size_type >	vg::thread_ids_t