#include <transcriptome.hpp>

Inheritance diagram for vg::EditedTranscriptPath:

Public Member Functions
	EditedTranscriptPath (const string &transcript_name, const string &embedded_path_name, const bool is_reference_in, const bool is_haplotype_in)

	EditedTranscriptPath (const string &transcript_name, const gbwt::size_type &haplotype_gbwt_id, const bool is_reference_in, const bool is_haplotype_in)

	~EditedTranscriptPath ()

handle_t	get_first_node_handle (const HandleGraph &graph) const

Public Member Functions inherited from vg::TranscriptPath
	TranscriptPath ()

	TranscriptPath (const string &transcript_name, const string &embedded_path_name, const bool is_reference_in, const bool is_haplotype_in)

	TranscriptPath (const string &transcript_name, const gbwt::size_type &haplotype_gbwt_id, const bool is_reference_in, const bool is_haplotype_in)

virtual	~TranscriptPath ()

string	get_name () const

Public Attributes
Path	path
	Transcript path. More...

Public Attributes inherited from vg::TranscriptPath
vector< string >	transcript_names
	Transcript names. More...

vector< pair< string, bool > >	embedded_path_names
	Embedded path names and reference path origin. More...

vector< pair< gbwt::size_type, bool > >	haplotype_gbwt_ids
	Haplotype gbwt ids and reference path origin. More...

uint32_t	copy_id
	Copy id of transcript path. More...

bool	is_reference
	Is it a reference and/or haplotype-specific transcript path. More...

bool	is_haplotype

Detailed Description

Data structure that defines an edited transcript path.

Constructor & Destructor Documentation

vg::EditedTranscriptPath::EditedTranscriptPath	(	const string &	transcript_name,
		const string &	embedded_path_name,
		const bool	is_reference_in,
		const bool	is_haplotype_in
	)

inline

vg::EditedTranscriptPath::EditedTranscriptPath	(	const string &	transcript_name,
		const gbwt::size_type &	haplotype_gbwt_id,
		const bool	is_reference_in,
		const bool	is_haplotype_in
	)

inline

vg::EditedTranscriptPath::~EditedTranscriptPath ( )

inline

handle_t vg::EditedTranscriptPath::get_first_node_handle ( const HandleGraph & graph ) const

Path vg::EditedTranscriptPath::path

The documentation for this struct was generated from the following files: