#include <transcriptome.hpp>
Inheritance diagram for vg::TranscriptPath:
Public Member Functions | |
| TranscriptPath () | |
| TranscriptPath (const string &transcript_name, const string &embedded_path_name, const bool is_reference_in, const bool is_haplotype_in) | |
| TranscriptPath (const string &transcript_name, const gbwt::size_type &haplotype_gbwt_id, const bool is_reference_in, const bool is_haplotype_in) | |
| virtual | ~TranscriptPath () |
| string | get_name () const |
Public Attributes | |
| vector< string > | transcript_names |
| Transcript names. More... | |
| vector< pair< string, bool > > | embedded_path_names |
| Embedded path names and reference path origin. More... | |
| vector< pair< gbwt::size_type, bool > > | haplotype_gbwt_ids |
| Haplotype gbwt ids and reference path origin. More... | |
| uint32_t | copy_id |
| Copy id of transcript path. More... | |
| bool | is_reference |
| Is it a reference and/or haplotype-specific transcript path. More... | |
| bool | is_haplotype |
Detailed Description
Data structure that defines a base transcript path.
Constructor & Destructor Documentation
◆ TranscriptPath() [1/3]
|
inline |
◆ TranscriptPath() [2/3]
|
inline |
◆ TranscriptPath() [3/3]
|
inline |
◆ ~TranscriptPath()
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inlinevirtual |
Member Function Documentation
◆ get_name()
| string vg::TranscriptPath::get_name | ( | ) | const |
Member Data Documentation
◆ copy_id
| uint32_t vg::TranscriptPath::copy_id |
Copy id of transcript path.
◆ embedded_path_names
| vector<pair<string, bool> > vg::TranscriptPath::embedded_path_names |
Embedded path names and reference path origin.
◆ haplotype_gbwt_ids
| vector<pair<gbwt::size_type, bool> > vg::TranscriptPath::haplotype_gbwt_ids |
Haplotype gbwt ids and reference path origin.
◆ is_haplotype
| bool vg::TranscriptPath::is_haplotype |
◆ is_reference
| bool vg::TranscriptPath::is_reference |
Is it a reference and/or haplotype-specific transcript path.
◆ transcript_names
| vector<string> vg::TranscriptPath::transcript_names |
Transcript names.
The documentation for this struct was generated from the following files:
- src/transcriptome.hpp
- src/transcriptome.cpp
