#include <transcriptome.hpp>

Inheritance diagram for vg::CompletedTranscriptPath:

Public Member Functions
	CompletedTranscriptPath (const EditedTranscriptPath &edited_transcript_path)

	CompletedTranscriptPath (const EditedTranscriptPath &edited_transcript_path, const HandleGraph &graph)

	~CompletedTranscriptPath ()

handle_t	get_first_node_handle (const HandleGraph &graph) const

Public Member Functions inherited from vg::TranscriptPath
	TranscriptPath ()

	TranscriptPath (const string &transcript_name, const string &embedded_path_name, const bool is_reference_in, const bool is_haplotype_in)

	TranscriptPath (const string &transcript_name, const gbwt::size_type &haplotype_gbwt_id, const bool is_reference_in, const bool is_haplotype_in)

virtual	~TranscriptPath ()

string	get_name () const

Public Attributes
vector< handle_t >	path
	Transcript path. More...

Public Attributes inherited from vg::TranscriptPath
vector< string >	transcript_names
	Transcript names. More...

vector< pair< string, bool > >	embedded_path_names
	Embedded path names and reference path origin. More...

vector< pair< gbwt::size_type, bool > >	haplotype_gbwt_ids
	Haplotype gbwt ids and reference path origin. More...

uint32_t	copy_id
	Copy id of transcript path. More...

bool	is_reference
	Is it a reference and/or haplotype-specific transcript path. More...

bool	is_haplotype

Detailed Description

Data structure that defines a completed transcript path.

Constructor & Destructor Documentation

vg::CompletedTranscriptPath::CompletedTranscriptPath ( const EditedTranscriptPath & edited_transcript_path )

vg::CompletedTranscriptPath::CompletedTranscriptPath	(	const EditedTranscriptPath &	edited_transcript_path,
		const HandleGraph &	graph
	)

vg::CompletedTranscriptPath::~CompletedTranscriptPath ( )

inline

handle_t vg::CompletedTranscriptPath::get_first_node_handle ( const HandleGraph & graph ) const

vector<handle_t> vg::CompletedTranscriptPath::path

The documentation for this struct was generated from the following files: