vg::Mapping Struct Reference

Public Attributes
Position	position = 1
	The position at which the first Edit, if any, in the Mapping starts. Inclusive. More...
repeated< Edit >	edit = 2
	The series of Edits to transform to region in read/alt. More...
int64	rank = 5
	The 1-based rank of the mapping in its containing path. More...

Detailed Description

A Mapping defines the relationship between a node in system and another entity. An empty edit list implies complete match, however it is preferred to specify the full edit structure. as it is more complex to handle special cases.

Member Data Documentation

edit

repeated<Edit> vg::Mapping::edit = 2

The series of Edits to transform to region in read/alt.

position

Position vg::Mapping::position = 1

The position at which the first Edit, if any, in the Mapping starts. Inclusive.

rank

int64 vg::Mapping::rank = 5

The 1-based rank of the mapping in its containing path.

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The documentation for this struct was generated from the following file:

• deps/libvgio/deps/vg.proto