vg.proto File Reference

Classes
struct	vg::Graph
struct	vg::Node
	Nodes store sequence data. More...
struct	vg::Edge
struct	vg::Edit
struct	vg::Mapping
struct	vg::Position
struct	vg::Path
struct	vg::Alignment
struct	vg::MultipathAlignment
struct	vg::Subpath
	A non-branching path of a MultipathAlignment. More...
struct	vg::Connection
	An edge in a MultipathAlignment between Subpaths that may not be contiguous in the graph. More...
struct	vg::KmerMatch
	Used to serialize kmer matches. More...
struct	vg::BasePileup
struct	vg::NodePileup
struct	vg::EdgePileup
	Keep pileup-like record for reads that span edges. More...
struct	vg::Pileup
	Bundle up Node and Edge pileups. More...
struct	vg::Snarl
	Describes a subgraph that is connected to the rest of the graph by two nodes. More...
struct	vg::Visit
	Describes a step of a walk through a Snarl either on a node or through a child Snarl. More...
struct	vg::SnarlTraversal
struct	vg::Locus
	Describes a genetic locus with multiple possible alleles, a genotype, and observational support. More...
struct	vg::Genotype
	Describes a genotype at a particular locus. More...
struct	vg::Support
	Aggregates information about the reads supporting an allele. More...
struct	vg::LocationSupport
	Support pinned to a location, which can be either a node or an edge. More...
struct	vg::Translation

Namespaces
	vg

Enumerations
enum	vg::SnarlType { vg::UNCLASSIFIED = 0, vg::ULTRABUBBLE = 1, vg::UNARY = 2 }
	Enumeration of the classifications of snarls. More...

Variables
	syntax = "proto3"
import google protobuf struct	proto

Variable Documentation

proto

import google protobuf struct proto

syntax

syntax = "proto3"