vg::PrimerPair Struct Reference

#include <primer_filter.hpp>

Public Attributes
Primer	left_primer
Primer	right_primer
string	chromosome_name
string	template_feature
size_t	linear_product_size = numeric_limits<size_t>::max()
size_t	template_position = numeric_limits<size_t>::max()
size_t	min_product_size = numeric_limits<size_t>::max()
size_t	max_product_size = numeric_limits<size_t>::max()
double	variation_level = 0.0
vector< HaplotypePartitioner::sequence_type >	sequence_visits

Detailed Description

Primer_pair struct contains primer pair attributesm including left primer, right primer, linear product size, minimum and maximum product size on the sequence graph, and boolean on whether the primers locate in low variation region of the sequence graph.

Member Data Documentation

chromosome_name

string vg::PrimerPair::chromosome_name

left_primer

Primer vg::PrimerPair::left_primer

linear_product_size

size_t vg::PrimerPair::linear_product_size = numeric_limits<size_t>::max()

max_product_size

size_t vg::PrimerPair::max_product_size = numeric_limits<size_t>::max()

min_product_size

size_t vg::PrimerPair::min_product_size = numeric_limits<size_t>::max()

right_primer

Primer vg::PrimerPair::right_primer

sequence_visits

vector<HaplotypePartitioner::sequence_type> vg::PrimerPair::sequence_visits

template_feature

string vg::PrimerPair::template_feature

template_position

size_t vg::PrimerPair::template_position = numeric_limits<size_t>::max()

variation_level

double vg::PrimerPair::variation_level = 0.0

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The documentation for this struct was generated from the following file:

• src/primer_filter.hpp