vg::RecombinatorFragment Struct Reference

Public Member Functions
	RecombinatorFragment (gbwt::size_type sequence_id, gbwt::edge_type from, gbwt::node_type to, size_t subchain_id, size_t haplotype_id)
size_t	generate (const gbwt::GBWT &index, const gbwt::FragmentMap &fragment_map, gbwt::GBWTBuilder &builder, gbwtgraph::MetadataBuilder &metadata, const std::string &contig_name) const

Public Attributes
gbwt::size_type	sequence_id
gbwt::edge_type	from
gbwt::node_type	to
size_t	subchain_id
size_t	haplotype_id

Constructor & Destructor Documentation

RecombinatorFragment()

vg::RecombinatorFragment::RecombinatorFragment ( gbwt::size_type  sequence_id, gbwt::edge_type  from, gbwt::node_type  to, size_t  subchain_id, size_t  haplotype_id  )

inline

Member Function Documentation

generate()

size_t vg::RecombinatorFragment::generate	(	const gbwt::GBWT &	index,
		const gbwt::FragmentMap &	fragment_map,
		gbwt::GBWTBuilder &	builder,
		gbwtgraph::MetadataBuilder &	metadata,
		const std::string &	contig_name
	)		const

Member Data Documentation

from

gbwt::edge_type vg::RecombinatorFragment::from

haplotype_id

size_t vg::RecombinatorFragment::haplotype_id

sequence_id

gbwt::size_type vg::RecombinatorFragment::sequence_id

subchain_id

size_t vg::RecombinatorFragment::subchain_id

to

gbwt::node_type vg::RecombinatorFragment::to

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The documentation for this struct was generated from the following file:

• src/recombinator.cpp