vg::algorithms::kmer_t Struct Reference

Stores a kmer in the context of a graph. More...

#include <kmer.hpp>

Public Member Functions
	kmer_t (const std::string &s, const pos_t &b, const pos_t &e, const handle_t &c)

Public Attributes
std::string	seq
	the kmer More...
pos_t	begin
	our start position More...
pos_t	end
	Used in construction. More...
handle_t	curr
	one past the (current) end of the kmer More...
uint16_t	forks
	the next handle we extend into More...

Detailed Description

Stores a kmer in the context of a graph.

Constructor & Destructor Documentation

kmer_t()

vg::algorithms::kmer_t::kmer_t ( const std::string &  s, const pos_t &  b, const pos_t &  e, const handle_t &  c  )

inline

Member Data Documentation

begin

pos_t vg::algorithms::kmer_t::begin

our start position

curr

handle_t vg::algorithms::kmer_t::curr

one past the (current) end of the kmer

end

pos_t vg::algorithms::kmer_t::end

Used in construction.

forks

uint16_t vg::algorithms::kmer_t::forks

the next handle we extend into

seq

std::string vg::algorithms::kmer_t::seq

the kmer

---

The documentation for this struct was generated from the following file:

• src/algorithms/kmer.hpp