variant_recall.hpp File Reference

#include <iostream>
#include <algorithm>
#include <functional>
#include <numeric>
#include <cmath>
#include <limits>
#include <unordered_set>
#include <unordered_map>
#include <regex>
#include <vector>
#include <list>
#include <vg/vg.pb.h>
#include "vg.hpp"
#include "deconstructor.hpp"
#include "hash_map.hpp"
#include "types.hpp"
#include "genotypekit.hpp"

Namespaces
	vg

Functions
void	vg::variant_recall (VG *graph, vcflib::VariantCallFile *vars, FastaReference *ref_genome, vector< FastaReference * > insertions, string gamfile)
void	vg::genotype_svs (VG *graph, string gamfile, string refpath)