walk.hpp File Reference

#include <iostream>
#include <string>
#include <list>
#include <handlegraph/util.hpp>
#include <handlegraph/handle_graph.hpp>
#include <gbwt/gbwt.h>
#include "position.hpp"
#include "gbwt_helper.hpp"

Classes
struct	vg::algorithms::walk_t
	Record a <=k-length walk in the context of a graph. More...

Namespaces
	vg
	vg::algorithms

Functions
void	vg::algorithms::for_each_walk (const HandleGraph &graph, size_t k, size_t edge_max, const std::function< void(const walk_t &)> &lambda)
	Iterate over all the walks in the graph, running lambda on each. More...
std::ostream &	vg::algorithms::operator<< (std::ostream &out, const walk_t &walk)
	Print a walk_t to a stream. More...
uint64_t	vg::algorithms::walk_haplotype_frequency (const HandleGraph &graph, const gbwt::GBWT &haplotypes, const walk_t &walk)
std::vector< std::string >	vg::algorithms::walk_haplotype_names (const HandleGraph &graph, const gbwt::GBWT &haplotypes, const walk_t &walk)

Detailed Description

Functions for working with kmers_t's in HandleGraphs.