chunk_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <string>
#include <vector>
#include <regex>
#include "subcommand.hpp"
#include "../vg.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/stream_multiplexer.hpp>
#include <vg/io/vpkg.hpp>
#include "../utility.hpp"
#include "../chunker.hpp"
#include "../stream_index.hpp"
#include "../region.hpp"
#include "../haplotype_extracter.hpp"
#include "../algorithms/sorted_id_ranges.hpp"
#include "../algorithms/find_gbwt.hpp"
#include <bdsg/overlays/overlay_helper.hpp>
#include "../io/save_handle_graph.hpp"

Macros
#define	OPT_NO_EMBEDDED_HAPLOTYPES   1000

Functions
void	help_chunk (char **argv)
int	main_chunk (int argc, char **argv)

Macro Definition Documentation

OPT_NO_EMBEDDED_HAPLOTYPES

#define OPT_NO_EMBEDDED_HAPLOTYPES   1000

Function Documentation

help_chunk()

void help_chunk

(

char **

argv

)

main_chunk()

int main_chunk	(	int	argc,
		char **	argv
	)