#include <haplotypes.hpp>

Inheritance diagram for haplo::LinearScoreProvider:

Public Member Functions
	LinearScoreProvider (const linear_haplo_structure &index)

pair< double, bool >	score (const vg::Path &, haploMath::RRMemo &memo)
	Score the given path usign the given memo. More...

Public Member Functions inherited from haplo::ScoreProvider
virtual int64_t	get_haplotype_count () const

virtual bool	has_incremental_search () const

virtual IncrementalSearchState	incremental_find (const vg::Position &pos) const

virtual IncrementalSearchState	incremental_extend (const IncrementalSearchState &state, const vg::Position &pos) const

virtual	~ScoreProvider ()=default

Private Attributes
const linear_haplo_structure &	index

Detailed Description

Score haplotypes using a linear_haplo_structure.

Constructor & Destructor Documentation

haplo::LinearScoreProvider::LinearScoreProvider ( const linear_haplo_structure & index )

pair< double, bool > haplo::LinearScoreProvider::score	(	const vg::Path &	,
		haploMath::RRMemo &	memo
	)

virtual

Score the given path usign the given memo.

const linear_haplo_structure& haplo::LinearScoreProvider::index

private

The documentation for this class was generated from the following files: