vg::FixedGenotypePriorCalculator Class Reference

#include <genotypekit.hpp>

Inheritance diagram for vg::FixedGenotypePriorCalculator:

Public Member Functions
virtual	~FixedGenotypePriorCalculator ()=default
virtual double	calculate_log_prior (const Genotype &genotype)
Public Member Functions inherited from vg::GenotypePriorCalculator
virtual	~GenotypePriorCalculator ()=default

Public Attributes
double	homozygous_prior_ln = prob_to_logprob(0.999)
double	heterozygous_prior_ln = prob_to_logprob(0.001)

Detailed Description

This genotype prior calculator has a fixed prior for homozygous genotypes and a fixed prior for hets.

Constructor & Destructor Documentation

~FixedGenotypePriorCalculator()

virtual vg::FixedGenotypePriorCalculator::~FixedGenotypePriorCalculator ( )

virtualdefault

Member Function Documentation

calculate_log_prior()

double vg::FixedGenotypePriorCalculator::calculate_log_prior ( const Genotype &  genotype )

virtual

Return the log prior of the given genotype.

TODO: ploidy priors on nested sites???

Implements vg::GenotypePriorCalculator.

Member Data Documentation

heterozygous_prior_ln

double vg::FixedGenotypePriorCalculator::heterozygous_prior_ln = prob_to_logprob(0.001)

homozygous_prior_ln

double vg::FixedGenotypePriorCalculator::homozygous_prior_ln = prob_to_logprob(0.999)

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The documentation for this class was generated from the following files:

• src/genotypekit.hpp
• src/genotypekit.cpp