vg::Translator Class Reference

#include <translator.hpp>

Public Member Functions
	Translator (void)
	Translator (istream &in)
	Translator (const vector< Translation > &trans)
void	load (const vector< Translation > &trans)
void	build_position_table (void)
Translation	get_translation (const Position &position)
bool	has_translation (const Position &position, bool ignore_strand=true)
Position	translate (const Position &position)
Position	translate (const Position &position, const Translation &translation)
Edge	translate (const Edge &edge)
Mapping	translate (const Mapping &mapping)
Path	translate (const Path &path)
Alignment	translate (const Alignment &aln)
Locus	translate (const Locus &locus)
Translation	overlay (const Translation &trans)

Public Attributes
vector< Translation >	translations
map< pos_t, Translation * >	pos_to_trans

Detailed Description

Class to map paths into a base graph found via a set of Translations

Constructor & Destructor Documentation

Translator() [1/3]

vg::Translator::Translator

(

void

)

Translator() [2/3]

vg::Translator::Translator

(

istream &

in

)

Translator() [3/3]

vg::Translator::Translator

(

const vector< Translation > &

trans

)

Member Function Documentation

build_position_table()

void vg::Translator::build_position_table

(

void

)

get_translation()

Translation vg::Translator::get_translation

(

const Position &

position

)

has_translation()

bool vg::Translator::has_translation	(	const Position &	position,
		bool	ignore_strand = true
	)

load()

void vg::Translator::load

(

const vector< Translation > &

trans

)

overlay()

Translation vg::Translator::overlay

(

const Translation &

trans

)

translate() [1/7]

Alignment vg::Translator::translate

(

const Alignment &

aln

)

translate() [2/7]

Edge vg::Translator::translate

(

const Edge &

edge

)

translate() [3/7]

Locus vg::Translator::translate

(

const Locus &

locus

)

translate() [4/7]

Mapping vg::Translator::translate

(

const Mapping &

mapping

)

translate() [5/7]

Path vg::Translator::translate

(

const Path &

path

)

translate() [6/7]

Position vg::Translator::translate

(

const Position &

position

)

translate() [7/7]

Position vg::Translator::translate	(	const Position &	position,
		const Translation &	translation
	)

Member Data Documentation

pos_to_trans

map<pos_t, Translation*> vg::Translator::pos_to_trans

translations

vector<Translation> vg::Translator::translations

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The documentation for this class was generated from the following files:

• src/translator.hpp
• src/translator.cpp