vg::TraversalSupportCalculator Class Reference

#include <genotypekit.hpp>

Inheritance diagram for vg::TraversalSupportCalculator:

Public Member Functions
virtual	~TraversalSupportCalculator ()=default
virtual vector< Support >	calculate_supports (const Snarl &site, const vector< SnarlTraversal > &traversals, const vector< Alignment * > &reads, const vector< vector< bool >> &consistencies) const =0

Detailed Description

Represents a strategy for calculating Supports for SnarlTraversals. Polymorphic base class/interface.

Constructor & Destructor Documentation

~TraversalSupportCalculator()

virtual vg::TraversalSupportCalculator::~TraversalSupportCalculator ( )

virtualdefault

Member Function Documentation

calculate_supports()

virtual vector<Support> vg::TraversalSupportCalculator::calculate_supports ( const Snarl &  site, const vector< SnarlTraversal > &  traversals, const vector< Alignment * > &  reads, const vector< vector< bool >> &  consistencies  ) const

pure virtual

Return Supports for all the SnarlTraversals, given the reads and their consistency flags.

Implemented in vg::SimpleTraversalSupportCalculator.

---

The documentation for this class was generated from the following file:

• src/genotypekit.hpp