- u -

• uf : vg::ContractingGraph
• unaligned_bands : vg::AlignmentChainModel
• unaltered_motif_data : vg::SpliceStats
• unary_boundaries : vg::NetGraph
• uncanonicalizable_sv_warned : vg::Constructor
• uncompressed_out : vg::io::MessageEmitter
• uncompressed_out_ostream : vg::io::MessageEmitter
• uncompressed_out_written : vg::io::MessageEmitter
• unfold_max_length : vg::Genotyper
• union_find : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
• uniqueness : vg::Alignment
• universe_size : vg::SmallBitset
• unpaired_penalty : vg::BaseMapper
• unstranded : vg::OrientedDistanceClusterer
• untangle_allele_traversals : vg::Deconstructor
• upper_bound : vg::BREAKPOINT
• upper_bound_heuristic : vg::TargetValueSearch
• USABLE_BITS : vg::varint_vector_t
• use_approx_sub_mem_count : vg::BaseMapper
• use_avg : vg::Filter
• use_bounded_syncmers : vg::IndexingParameters
• use_cluster_mq : vg::Mapper
• use_explored_cap : vg::MinimizerMapper
• use_fanout_match_alg : vg::MultipathMapper
• use_greedy_mem_restarts : vg::BaseMapper
• use_internal_connectivity : vg::NetGraph
• use_mapq : vg::Genotyper , vg::PoissonSupportSnarlCaller
• use_min_dist_clusterer : vg::MultipathMapper
• use_pessimistic_tail_alignment : vg::MultipathMapper
• use_population_mapqs : vg::MultipathMapper
• use_stripped_match_alg : vg::MultipathMapper
• use_tvs_clusterer : vg::MultipathMapper