gamcompare_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <string>
#include <vector>
#include <set>
#include "subcommand.hpp"
#include "../alignment.hpp"
#include "../annotation.hpp"
#include "../snarl_distance_index.hpp"
#include "../vg.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>

Classes
struct	MappingRun

Functions
void	help_gamcompare (char **argv)
std::vector< MappingRun >	base_mappings (const Alignment &aln)
int	main_gamcompare (int argc, char **argv)

Function Documentation

base_mappings()

std::vector<MappingRun> base_mappings

(

const Alignment &

aln

)

help_gamcompare()

void help_gamcompare

(

char **

argv

)

main_gamcompare()

int main_gamcompare	(	int	argc,
		char **	argv
	)