graph_caller.hpp File Reference

#include <iostream>
#include <algorithm>
#include <functional>
#include <cmath>
#include <limits>
#include <unordered_set>
#include <tuple>
#include "handle.hpp"
#include "snarls.hpp"
#include "traversal_finder.hpp"
#include "snarl_caller.hpp"
#include "region.hpp"
#include "zstdutil.hpp"
#include "vg/io/alignment_emitter.hpp"
#include "augref.hpp"

Classes
class	vg::GraphCaller
class	vg::VCFOutputCaller
class	vg::GAFOutputCaller
class	vg::VCFGenotyper
class	vg::LegacyCaller
class	vg::FlowCaller
class	vg::NestedFlowCaller
struct	vg::NestedFlowCaller::CallRecord
	stuff we remember for each snarl call, to be used when genotyping its parent More...
class	vg::SnarlGraph

Namespaces
	vg

Typedefs
using	vg::TraversalSet = vector< SnarlTraversal >
using	vg::ChildTraversalSets = vector< TraversalSet >

Variables
constexpr int	vg::STAR_ALLELE_MARKER = -2
constexpr int	vg::MISSING_ALLELE_MARKER = -1