index_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <random>
#include <string>
#include <vector>
#include "subcommand.hpp"
#include "../vg.hpp"
#include "xg.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include "../io/save_handle_graph.hpp"
#include "../stream_index.hpp"
#include "../vg_set.hpp"
#include "../utility.hpp"
#include "../region.hpp"
#include "../integrated_snarl_finder.hpp"
#include "../snarl_distance_index.hpp"
#include "../source_sink_overlay.hpp"
#include "../gbwtgraph_helper.hpp"
#include "../gcsa_helper.hpp"
#include <gcsa/algorithms.h>
#include <bdsg/overlays/packed_subgraph_overlay.hpp>
#include <handlegraph/algorithms/weakly_connected_components.hpp>

Functions
void	help_index (char **argv)
int	main_index (int argc, char **argv)

Variables
const size_t	DEFAULT_SNARL_LIMIT = 50000

Function Documentation

help_index()

void help_index

(

char **

argv

)

main_index()

int main_index	(	int	argc,
		char **	argv
	)

Variable Documentation

DEFAULT_SNARL_LIMIT

const size_t DEFAULT_SNARL_LIMIT = 50000