snarls_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include <regex>
#include "subcommand.hpp"
#include "../vg.hpp"
#include <vg/vg.pb.h>
#include "../traversal_finder.hpp"
#include "../cactus_snarl_finder.hpp"
#include "../integrated_snarl_finder.hpp"
#include "../gbwtgraph_helper.hpp"
#include "../algorithms/find_translation.hpp"
#include "../algorithms/back_translate.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>

Functions
void	help_snarl (char **argv)
int	main_snarl (int argc, char **argv)

Function Documentation

help_snarl()

void help_snarl

(

char **

argv

)

main_snarl()

int main_snarl	(	int	argc,
		char **	argv
	)