This stores information about the state of the forest as we fill it in. More...

Public Member Functions
	forest_growing_state_t (const vector< Seed > &seeds, const SnarlDistanceIndex &distance_index, size_t gap_distance_limit, size_t distance_limit)

Public Attributes
const vector< Seed > *	seeds

const SnarlDistanceIndex *	distance_index

vector< size_t >	seed_sort_order

vector< sort_value_t >	sort_values_by_seed

vector< vector< child_info_t > >	sibling_indices_at_depth

size_t	active_tree_index

vector< pair< size_t, bool > >	open_chains

forward_list< interval_state_t >	intervals_to_process

vector< interval_state_t >	open_intervals

size_t	gap_distance_limit

size_t	distance_limit

Detailed Description

This stores information about the state of the forest as we fill it in.

Constructor & Destructor Documentation

◆ forest_growing_state_t()

vg::ZipCodeForest::forest_growing_state_t::forest_growing_state_t	(	const vector< Seed > &	seeds,
		const SnarlDistanceIndex &	distance_index,
		size_t	gap_distance_limit,
		size_t	distance_limit
	)

inline

Member Data Documentation

◆ active_tree_index

size_t vg::ZipCodeForest::forest_growing_state_t::active_tree_index

◆ distance_index

const SnarlDistanceIndex* vg::ZipCodeForest::forest_growing_state_t::distance_index

◆ distance_limit

size_t vg::ZipCodeForest::forest_growing_state_t::distance_limit

◆ gap_distance_limit

size_t vg::ZipCodeForest::forest_growing_state_t::gap_distance_limit

◆ intervals_to_process

forward_list<interval_state_t> vg::ZipCodeForest::forest_growing_state_t::intervals_to_process

◆ open_chains

vector<pair<size_t, bool> > vg::ZipCodeForest::forest_growing_state_t::open_chains

◆ open_intervals

vector<interval_state_t> vg::ZipCodeForest::forest_growing_state_t::open_intervals

◆ seed_sort_order

vector<size_t> vg::ZipCodeForest::forest_growing_state_t::seed_sort_order

◆ seeds

const vector<Seed>* vg::ZipCodeForest::forest_growing_state_t::seeds

◆ sibling_indices_at_depth

vector<vector<child_info_t> > vg::ZipCodeForest::forest_growing_state_t::sibling_indices_at_depth

◆ sort_values_by_seed

vector<sort_value_t> vg::ZipCodeForest::forest_growing_state_t::sort_values_by_seed

The documentation for this struct was generated from the following file:

src/zip_code_tree.hpp

Public Member Functions

Public Attributes