surject_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <string>
#include <vector>
#include <set>
#include "subcommand.hpp"
#include <bdsg/hash_graph.hpp>
#include <bdsg/overlays/path_position_overlays.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include "../vg.hpp"
#include "../xg.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include "../utility.hpp"
#include "../surjector.hpp"
#include "../hts_alignment_emitter.hpp"
#include "../multipath_alignment_emitter.hpp"
#include "../crash.hpp"
#include "../watchdog.hpp"

Functions
void	help_surject (char **argv)
int	main_surject (int argc, char **argv)

Function Documentation

help_surject()

void help_surject

(

char **

argv

)

main_surject()

int main_surject	(	int	argc,
		char **	argv
	)