traversal_finder.cpp File Reference

#include "traversal_finder.hpp"
#include "genotypekit.hpp"
#include "algorithms/k_widest_paths.hpp"
#include "cactus.hpp"
#include "gbwt_helper.hpp"
#include "haplotype_extracter.hpp"

Namespaces
	vg

Functions
string	vg::traversal_to_string (const PathHandleGraph *graph, const Traversal &traversal, int64_t max_steps)
string	vg::graph_interval_to_string (const HandleGraph *graph, const handle_t &start_handle, const handle_t &end_handle)
string	vg::path_interval_to_string (const PathHandleGraph *graph, const PathInterval &path_interval)
pair< vector< SnarlTraversal >, vector< pair< step_handle_t, step_handle_t > > >	vg::find_path_traversals (const Snarl &site)