variant_recall.cpp File Reference

#include <cstdint>
#include "variant_recall.hpp"
#include "cactus_snarl_finder.hpp"
#include "traversal_finder.hpp"
#include "augment.hpp"
#include "translator.hpp"
#include "xg.hpp"
#include "utility.hpp"
#include "filter.hpp"
#include "statistics.hpp"
#include "path_index.hpp"

Namespaces
	vg

Functions
void	vg::genotype_svs (VG *graph, string gamfile, string refpath)
void	vg::variant_recall (VG *graph, vcflib::VariantCallFile *vars, FastaReference *ref_genome, vector< FastaReference * > insertions, string gamfile)