vg::ConsistencyCalculator Class Reference

#include <genotypekit.hpp>

Inheritance diagram for vg::ConsistencyCalculator:

Public Member Functions
virtual	~ConsistencyCalculator ()=default
virtual vector< bool >	calculate_consistency (const Snarl &site, const vector< SnarlTraversal > &traversals, const Alignment &read) const =0

Detailed Description

Represents a strategy for computing consistency between Alignments and SnarlTraversals. Determines whether a read is consistent with a SnarlTraversal or not (but has access to all the SnarlTraversals). Polymorphic base class/interface.

Constructor & Destructor Documentation

~ConsistencyCalculator()

virtual vg::ConsistencyCalculator::~ConsistencyCalculator ( )

virtualdefault

Member Function Documentation

calculate_consistency()

virtual vector<bool> vg::ConsistencyCalculator::calculate_consistency ( const Snarl &  site, const vector< SnarlTraversal > &  traversals, const Alignment &  read  ) const

pure virtual

Return true or false for each tarversal of the site, depending on if the read is consistent with it or not.

Implemented in vg::SimpleConsistencyCalculator.

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The documentation for this class was generated from the following file:

• src/genotypekit.hpp